Comments (3)
Sorry for that, it's fixed in the latest version (v0.4.3), please update.
Affected verions: v0.4.0, v0.4.1, v0.4.2
from seqkit.
Thanks! Perfect!
One more question please - How can I get contigs from scaffolds (use seqkit). Please see below
input scaffolds file
>test1
GCATCGATCAGCTACGATCATCACTA
GNNNNNNTACATCAGCACTACATCACTNNNNN
>test2
GTACGCTACGANNNGCTACGACTACGATATATATATATATATATATATATATATATATATATAT
GCTACGATCACNTACATCGACTA
>test3
GTGTGCTACATCATCACTACGTACTACAT
>test4
AA
output contigs file
>test1
GCATCGATCAGCTACGATCATCACTA
G
>test1_2
ACATCAGCACTACATCACT
>test2
GTACGCTACGA
>test2_1
GCTACGACTACGATATATATATATATATATATATATATATATATATATAT
GCTACGATCACNTACATCGACTA
>test3
GTGTGCTACATCATCACTACGTACTACAT
>test4
AA
i.e. essentially splitting the sequences by n/N.
from seqkit.
We talked about this: https://www.biostars.org/p/211400/
from seqkit.
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