shrutimarwaha Goto Github PK
Name: Shruti Marwaha
Type: User
Company: Academia
Bio: Computational Biologist with experience in Next Gen Sequencing, Machine Learning, Mathematical Modeling.
Location: Mountain View
Name: Shruti Marwaha
Type: User
Company: Academia
Bio: Computational Biologist with experience in Next Gen Sequencing, Machine Learning, Mathematical Modeling.
Location: Mountain View
codes related to bioinformatics tasks
Analysis of CyTOF data
find commmon differentially expressed genes among different gastric cancer microarray studies
Analysis of gene expression data (microarray, GSE27342) to identify differentially expressed genes between tumor and normal tissue. Further use the differentially expressed genes (DEG) to identify potential therapeutic compounds using Connectivity Map (CMap).
GTEx Consortium data production and analysis pipelines
Reporting toolbox for happy output
Head&NeckCancer repository contains codes for analysis of different Head&NeckCancer datasets
Kaggle Challenge to classify 39 different crimes that occurred in SF in 12 years. https://www.kaggle.com/c/sf-crime
Rmd source files for the HarvardX series PH525x
Machine Learning related R scripts
Machine Learning Project to analyze data from ICU patients from MIMIC.
MIMIC Code Repository: Code shared by the research community for the MIMIC-III database
Shell scripts for different tasks for analyzing Next Generation Sequencing (NGS) data
"You have a chain with links numbered through . Every minute, you draw a random link from a bag, and connect it to any other consecutivelynumbered link that you drew before.For example, if you drew , you would end up with three subchains: . You keep on drawing until you have drawn all links and connected them into a single chain of length . Let be the maximum number of subchains in this process. Find what is the mean and standard deviation of the distribution of if = 8 or 16 or 32"
Python Codes
This is an R Markdown document to analyze qPCR data from an experiment which tests if SHH can further enhance the expression of cytokines (IL-12, IL-1β, CXCL-2 and TNF) in H. pylori stimulated macrophages.
Analysis of qPCR Experiments: Analysis of qPCR data obtained from WT and PC-SHH-KO mice infected with Helicobacter pylori or uninfected. Two types of statistical tests are performed: Interaction plots and Two-way ANOVA.
Miscellaneous R codes
This repository contains codes that perform Quality Control, Analysis of QC results, Read Mapping, Transcriptome Reconstruction, Differential Expression Analysis and Functional Analysis
SQL related projects
IL-1b, IL-10 and IFNg trajectories in Helicobacter pylori infection. We extracted and analyzed time-series data for IL-10, IFNγ, IL-1β from gse37938 dataset. For a given probe, median of its expression values was calculated for each time point. The median values for both control and H.pylori infection were plotted against time to study their trajectory. Probes with two or more missing values for more than one time point, were ignored. To address the problem of probe selection, median value was taken for probes with same Genbank ID (GB_list ID ) while probes with different Genbank ID were analyzed separately.
Shruti's personal website
To identify similarity and patterns among different cuisines of the world.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.