siemdejong/dlup

Dlup are the Deep Learning Utilities for Pathology developed at the Netherlands Cancer Institute

Deep Learning Utilities for Pathology

Dlup offers a set of utilities to ease the process of running Deep Learning algorithms on Whole Slide Images.

Check the full documentation for more details on how to use dlup.

Features

• Dataset classes to handle whole-slide images in a tile-by-tile manner
• Annotation classes which can load GeoJSON and ASAP formats and convert these to masks.
• Command-line utilities to report on the metadata of WSIs, tile WSIs, and convert masks to polygons.

Quickstart

The package can be installed using pip install dlup.