Name: Silvina del Carmen
Type: User
Company: Artizan biosciences
Bio: I am an immunologist slowly diving in the world of bioinformatics. Using R, Python and Unix for RNA-seq, sc-RNA-seq, PacBio Long Read-RNA-seq, CITE-seq analysis
Location: New Haven, CT
Silvina del Carmen's Projects
Open source code for AlphaFold.
Analysis of alternative splicing using RNAseq
List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
:books: Freely available programming books
An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps
Integrative Pipeline for Splicing Analyses (IPSA)
Isoform-level expression patterns in single-cell RNA-sequencing data
Jackson Labs hands-on workshop material for using Jupyter Notebooks on CloudOS
Area-weighted venn-diagrams for Python/matplotlib
Public repository containing research code for the TCGA PanCanAtlas Splicing project
Data Analysis and Visualization in Python for Ecologists
RAGE-seq scripts
Tool for the detection and quantification of alternative splicing events from RNA-Seq data.
Private repo for Liz's modified SQANTI
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
Vennerable provides Venn diagrams in R. It displays Venn and Euler diagrams for up to 9 different sets and using a variety of geometries. It allows the display of area-weighted Venn diagrams and allows fine graphical control over the result.