simjoly/qcbsworkshop

Workshop on phylogenies and statistics given at the QCBS Biodiversity intensive course

Workshop on Phylogenetic Comparative Methods

This folder contains material for a full-day workshop introducing Phylogenetic Generalized Least Squares (PGLS), Phylogenetic Mixed Models, the estimation of diversification rates, and teaching how to implement them in the R language.

Workshop material

PGLS

Phylogenies and Statistics | pdf presentation

R tutorial | Tutorial with examples in R

Data | Files you will need to perform the examples in the tutorial

Solutions to the challenges in the tutorial | Tutorial in R with solutions to the challenges

Diversification rates

Presentation on diversification | html presentation

R tutorial | Tutorial with examples in R

Data | Files you will need to perform the examples in the tutorial

Other useful information

The links below might provide additional information of interest.

Luke Harmon's book - Phylogenetic Comparative Methods

Course on Phylogenetic Comparative Methods

Introduction to phylogenies in R - pdf

Reading and making phylogenetic trees in R - pdf

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The material was last updated in November 2019.