singleronbio/scope-tools

Single-Cell Omics Preparation Entity Tools

scope-tools's Issues

keyError

我使用最新版scope-tools-0.2.1，使用默认的参数，报错了。然后发现想使用上一个版本却不能安装。
conda install -c singleronbio scope-tools=0.2.0
找不到，希望作者解决一下，谢谢~

featurecounts missing 3 required positional arguments

您好！我在运行下面这个命令的时候：
scope featureCounts
--input ./samplename/03.STAR/samplename_Aligned.sortedByCoord.out.bam
--annot ./references/Homo_sapiens/Ensembl/GRCh38/Homo_sapiens.GRCh38.99.gtf
--sample samplename
--outdir ./
报错如下：
Traceback (most recent call last):
File "/home/admin/miniconda2/envs/scope/bin/scope", line 10, in
sys.exit(cli())
File "/home/admin/miniconda2/envs/scope/lib/python3.7/site-packages/click/core.py", line 829, in call
return self.main(*args, **kwargs)
File "/home/admin/miniconda2/envs/scope/lib/python3.7/site-packages/click/core.py", line 782, in main
rv = self.invoke(ctx)
File "/home/admin/miniconda2/envs/scope/lib/python3.7/site-packages/click/core.py", line 1289, in invoke
rv.append(sub_ctx.command.invoke(sub_ctx))
File "/home/admin/miniconda2/envs/scope/lib/python3.7/site-packages/click/core.py", line 1066, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home/admin/miniconda2/envs/scope/lib/python3.7/site-packages/click/core.py", line 610, in invoke
return callback(*args, **kwargs)
File "/home/admin/miniconda2/envs/scope/lib/python3.7/site-packages/click/decorators.py", line 21, in new_func
return f(get_current_context(), *args, **kwargs)
TypeError: featurecounts_pipe() missing 3 required positional arguments: 'format', 'nthreads', and 'type'
麻烦您帮忙解决一下，谢谢~