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bowtie-algorithm's Introduction

DNA assemble

BWT 를 활용한 Bowtie algorithm

install

reference dna 파일 다운로드

wget http://skyrich3.synology.me/~Huni/chr1.fna

how to use

  • 폴더에서 bwt_index_table 와 reference_dna 파일을 가져옵니다. (.txt 파일로 변환해서 써야함)
  • main.cpp 에서 n, m, l 값 조정
  • BWT_outer.cpp 에서 외부정렬시 사용할 파일 개수 설정
  • BW matrix 가 완성되면, BWT_outer.cpp 241번째 줄 주석처리 하여 사용

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