smitha-anil/amdprogresscnn

Late AMD progression classification using fundus images and genotypes

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AMDprogressCNN

Use fundus image to classify whether the late AMD progression time is before or after 3 years

python code_img2amdState2time.py --cutoff_yr 3 --input_image test1.jpg --out_file output.txt --weights "/directory/weights"

To generate saliency map to visualize what part of the image is focused by CNN to make the classification decision

python code_img2amdState2time_saliency.py --cutoff_yr 3 --input_image test1.jpg --out_image output.png --weights "/directory/weights"

Use fundus image and 52 reported SNPs to predict whether the late AMD progression time is before or after 3 years

python code_imgNgeno2amdState2time.py --cutoff_yr 3 --input_image test1.jpg --input_geno input.geno --out_file output.txt --weights "/directory/weights"