Comments (1)
dlaehnemann
commented on May 27, 2024
Sorry, we somehow missed this issue.
The part of the config that you posted looks OK. But as you mention that the docs are not that great: I have recently reworked the documentation for setting up your own instance of the workflow, but this is not yet released and thus not yet displayed in the snakemake workflow catalog. Maybe this already helps:
https://github.com/snakemake-workflows/rna-seq-kallisto-sleuth/tree/ecc9ab712b94e175a2c9e7c79b365faa98a3df44/config
Otherwise, it might make sense to switch to the newest release of the workflow, which is v2.5.1 (you are using v2.3.0. We constantly fix things, so the underlying cause might already have been fixed.
And finally, the error about the truth value of a Series might indicate that you are getting a Series (basically a pandas list of things) instead of a single item somewhere, so maybe you have some sort of duplicate in your units.tsv (or samples.tsv) somewhere beyond the head part.
If none of these help, maybe posting the full configuration can get us closer to a solution.
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