Comments (4)
from flowsom.
Thanks for your quick reply. NewData sounds great. My thought is oriented towards matrices of your expression with all transformation already done, so I have to think to fit into NewData, but it definitively sounds great.
Sorry to waste your time, I should have read the NEWS before posting. I should update my knowledge about the FlowSOM workflow.
All the best,
Samuel
from flowsom.
My brain is working slowly this morning. In fact, I want to transfer all information (cluster id, but also UMAP coordinates...) from a set of analyzed cells to a larger set of cells. As MapDataToCodes is returning an index, it sounds more interesting for this aim.
Let me know about your opinion,
Samuel
from flowsom.
Feel free to reopen the issue to keep track of this idea.
All the best.
from flowsom.
Related Issues (20)
- GetFlowJoLabels error: FCS files not found HOT 2
- Calling FlowSOM:::MapDataToCodes produces a segmentation fault HOT 3
- Elbow plot variance calculation HOT 3
- Speedup when threshold < 1
- No output
- FlowSOM installation issues with boost library
- Add option to return just the weights from the`SOM` function
- Release version out of date compared to Flowjo Plugin. HOT 4
- Calling MapDataDataToCodes produces long vectors error HOT 8
- Long Vectors error in SOM Function (Analogous to issue #54) HOT 4
- Building error on Bioconductor HOT 3
- AggregateFlowFrames with channels given produces error HOT 1
- Porting FlowSOM to python HOT 1
- unable to find an inherited method for function ‘compensate’ for signature ‘"flowFrame", "NULL"’ HOT 2
- Error while using GetFeatures to map files HOT 5
- Using `importance` argument for SOM mapping? HOT 2
- Clusters with similar marker expression level are not clustered in the same metacluster HOT 2
- GetFlowJoLabels HOT 1
- Can't get GetFlowJoLabels() to match gating in FlowJo workspace
- Error in PlotStars and FlowSOMmary in code that previously worked HOT 1
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from flowsom.