Breedbase and Solgenomics's Projects
Git repository for Perl local-lib for faster installs (eg. Dockerfiles)
Perl interface to Pathway Tools
Scripts and libraries for managing the SGN Phenome database
High throughput phylogenomic analysis pipeline
a streaming capable proxy for Plack
docker file for breedbase postgresql instance
Interface for the potatobase database
For faster Docker image builds
Code from my time at Roslin that I'm making publicly available
Compiled R dependencies for Solgenomics & Breedbase databases, for faster install of docker etc.
R packages
The code behind the Sol Genomics Network, Cassavabase and other Breedbase websites
general bioinformatics tools, non-project-specific
tools for SGN developers
per-developer versioned home directories for miscellaneous work
Code and content behind smmid.org
SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.
Standalone installation of a genome/phenome website and database.
The mason components needed to run the solgenomics.net website
Solgenomics Github Website
genomic selection tool
Shared management machinery for PSGI web apps running with Starman.
Web interface for SweetPotatoBase website
code and database for the expression query, mining, analysis, and visualization tools
Docker repo for expression atlas