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A Python framework for integrating biological databases and structured data sources in BEL

Home Page: http://bio2bel.rtfd.io

License: MIT License

Python 99.31% HTML 0.57% Shell 0.12%

bio2bel's Introduction

Bio2BEL Build Status Coverage Status Documentation Status zenodo

Bio2BEL is a project aimed at bringing biological databases and other structured knowledge sources in a wide variety of schemata into the unified framework of Biological Expression Language [1].

Two important places to look:

Installation Current version on PyPI Stable Supported Python Versions MIT License

Download the latest stable code from PyPI with:

$ python3 -m pip install bio2bel

or get the latest from GitHub with:

$ git clone https://github.com/bio2bel/bio2bel.git
$ cd bio2bel
$ python3 -m pip install -e .

or check the installation instructions.

Citation

If you find Bio2BEL useful for your work, please consider citing:

[1]Hoyt, C. T., et al. (2019). Integration of Structured Biological Data Sources using Biological Expression Language. bioRxiv, 631812.

bio2bel's People

Contributors

cthoyt avatar ddomingof avatar

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