srt32/git-actions

A GitHub Action to run arbitrary git commands

git-actions's Issues

Installation instructions for version 0.0.3 are incorrect

The installation instructions for version 0.0.3 are incorrect. It will install version 0.0.2 instead of version 0.0.3.

cannot clone submodule => error: cannot run ssh: No such file or directory

github workflow yaml:

name: Struo2

on:
  push:
    branches: [ master ]
  pull_request:
    branches: [ master ]

jobs:
  build:
    name: build (${{ matrix.python-version }}, ${{ matrix.os }})
    runs-on: ubuntu-latest
    env:
      DATADIR: data
    strategy:
      matrix:
        python-version: [3.6, 3.7]
    steps:
    - uses: conda-incubator/setup-miniconda@v2
      with:
        miniconda-version: 'latest'
        auto-update-conda: true
        python-version: ${{ matrix.python-version }}
        channels: conda-forge,bioconda
        activate-environment: struo2
    - name: Checkout repository
      uses: actions/checkout@v2
    - name: Checkout submodules
      uses: srt32/[email protected]
      with:
        args: git submodule update --init --recursive

Error:

Starting the git Action
Submodule 'bin/ll_pipeline_utils' ([email protected]:leylabmpi/ll_pipeline_utils.git) registered for path 'bin/ll_pipeline_utils'
Cloning into '/github/workspace/bin/ll_pipeline_utils'...
error: cannot run ssh: No such file or directory
fatal: unable to fork
fatal: clone of '[email protected]:leylabmpi/ll_pipeline_utils.git' into submodule path '/github/workspace/bin/ll_pipeline_utils' failed
Failed to clone 'bin/ll_pipeline_utils'. Retry scheduled
Cloning into '/github/workspace/bin/ll_pipeline_utils'...
error: cannot run ssh: No such file or directory
fatal: unable to fork
fatal: clone of '[email protected]:leylabmpi/ll_pipeline_utils.git' into submodule path '/github/workspace/bin/ll_pipeline_utils' failed
Failed to clone 'bin/ll_pipeline_utils' a second time, aborting

Cloning the repo & submodule locally works just fine. Both GitHub repos are public.

git: 'subtree' is not a git command.

Apparently the git subtree command cannot be identified. This is available as a separate package git-subtree.

Workflow Definition in Readme is not yaml

Hi

I'm confused and I beg for some clarification.

Every document from github on how to write workflows are displaying yaml. In your readme it's not yaml. Can you please refer to a document from Github explaining the DSL you are using in your readme, or make some example on how to integrate git-actions into yaml workflows.

I'm eager to hear from you, and finally to be able to integrate git-actions into my workflow.
Cheers Emanuel