Core features of pheweb: ref/alt, add_rsid, hg17/38

[jielab]

Core features of pheweb: ref/alt, add_rsid, hg17/38

[pjvandehaar]

1. I don't remember how MARKER_ID works. You'll have to look at the code I guess. Somewhere in the issues on this repo I suggested how to swap a1/a2 to get ref/alt using detect_ref.py. I recommend starting there.
2. Yeah, I recommend adding conf.symlink_to_cache_dir to make a symlink at

   pheweb/pheweb/load/download_rsids.py

   Line 25 in 76f0d0e

   shutil.copy(cache_filepath, dest_filepath)

   instead of copying the file. Maybe send a PR?
3. No, one dataset = one build.

[jielab]

Thanks! Can you please let me know where I could find detect_ref.py ?

[pjvandehaar]

pheweb <https://github.com/statgen/pheweb/tree/master/pheweb>/load <https://github.com/statgen/pheweb/tree/master/pheweb/load>/detect_ref.py Or run detect-ref at command line.

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