Comments (9)
I don't understand what you're saying.
Your bug reports tend to be far below average. Please do better.
from pheweb.
Sorry that I did not show the full screen on the previous screenshot.
Please see the updated screenshot below.
As you see, the second column "Phenotype" is not sorted.
How to make these phentoypes appear in order?
Thank you & best regadrs,
Jie
from pheweb.
The phenotypes are sorted by pvalue. You can change the order of generated-by-pheweb/phenotypes.json. If that doesn't work, then look in templates/phenotypes.html and search for the word "sort".
from pheweb.
Thanks. The pheweb/phenotypes.json file only has 1 line, looking quite complicated. I will not edit it to avoid making a mess. Ideally, it would be great that users could click the Category or Phenotype in the header row, to sort the phenotype list table.
I now got another displaying issue. Please see the screenshot below. Somehow there is NO manhattan plot and top table, even though there are some SNPs with P-value < 5E-08. Is this possibly due to the fact that might be NA or NaN values in my P-value column?
Thanks!
Jie
from pheweb.
If you send a pull request for sortable tables I'll merge it.
For the missing manhattan plot, you should open the browser console and look for an error there.
from pheweb.
Once I click the "new pull request", I was directed to a page shown as below.
Does this mean that I need to write some script to get this done and then you guys review it and approve/disapprove it? I thought that "create a pull request" is like "create a feature request ticket" ...
Anyway, I don't know how to write this type of code...
Regarding you reply: ”For the missing manhattan plot, you should open the browser console and look for an error there“, apparently I did not see any error message on the web browser. I attached the full screenshot in my last message, which is a screenshot of the browser console.
If you could kindly point me to the exact place (for pull request, and for browser console error), I would deeply appreciate.
Best regards,
Jie
from pheweb.
Once I click the "new pull request", I was directed to a page shown as below.
Does this mean that I need to write some script to get this done and then you guys review it and approve/disapprove it? I thought that "create a pull request" is like "create a feature request ticket" ...
Anyway, I don't know how to write this type of code...
Regarding you reply: ”For the missing manhattan plot, you should open the browser console and look for an error there“, apparently I did not see any error message on the web browser. I attached the full screenshot in my last message, which is a screenshot of the browser console.
If you could kindly point me to the exact place (for pull request, and for browser console error), I would deeply appreciate.
Best regards,
Jie
from pheweb.
Once I click the "new pull request", I was directed to a page shown as below.
Does this mean that I need to write some script to get this done and then you guys review it and approve/disapprove it? I thought that "create a pull request" is like "create a feature request ticket" ...
Anyway, I don't know how to write this type of code...
Regarding you reply: For the missing manhattan plot, you should open the browser console and look for an error there, apparently I did not see any error message on the web browser. I attached the full screenshot in my last message, which is a screenshot of the browser console.
If you could kindly point me to the exact place (for pull request, and for browser console error), I would deeply appreciate.
Best regards,
Jie
from pheweb.
No, sorry, I don't have time to teach you these things.
from pheweb.
Related Issues (20)
- Core features of pheweb: ref/alt, add_rsid, hg17/38 HOT 3
- stroke
- ModuleNotFoundError: No module named 'pheweb.command_line' HOT 3
- 404 not found error of phewas plot page (Pheweb with structural variants) HOT 4
- "An exception occurred" when I run the command: pheweb serve --open HOT 3
- pheweb to display multiple GWAS? HOT 1
- outdated instruction "pheweb phenolist glob-files" HOT 2
- PheWeb can display phenotype correlations generated by another tool. HOT 4
- pheweb-rg-pipeline does NOT work HOT 1
- Installation Problem HOT 7
- METSIM Pheweb Instance Not Working HOT 1
- the content of pheweb HOT 1
- Not clear when 3 parts of pheweb (executable, python scripts, huge dbSNP files) got installed HOT 1
- Starting `pheweb add-rsids`, Completed in 57 minutes HOT 2
- interpretation HOT 1
- after i renamed the input GWAS files HOT 5
- pheweb.utils.PheWebError: failed on field 'af' attempting to convert value 'NA' to type <class 'float'>
- Some Manhattan Plots don't show up HOT 5
- `pheweb augment-phenos` takes hours for just one single new GWAS HOT 2
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from pheweb.