stineb/dgvmlin

Publication-ready repository for analysis of DGVM linearity

Read this to understand this repo

Huanyuan Zhang-Zheng 2024/06/19

This repo is prepared for linearity diagnose project. This is for TRENDY v11 only. Old Trendy simulations are

Important note for reproducing figures

If you just want to reproduce figures, please don't read the nc files again. We have created gdf_Trendyv11_202406.rda which is a variable immediately ready for figures making. Just load this one into R, then go to Plot relationships chapter of DGVMLIN_trendy_v11.rmd

Important note for future development

Current R codes are written to enable investigation into most of the links (e.g. NPP versus GPP). However, you may wish to add or neglect a link, or to add or neglect a model.

To neglect a link or model, you are suggested to change the corresponding nc files into fake format e.g. CABLE-POP_cLitter_fake_INIT_MEAN.nc by:
(1) archive this real file (2) change the file name into fake (3) replace all the values in this nc file with 0 (4) change filename in filnams_trendy_v11_S1.csv to tell DGVMLIN_trendy_v11.rmd to read the fake files (5) In DGVMLIN_trendy_v11.rmd, chapter Calculate relationships, you will see that this variable become 0

To add a link or model, simply bring the real file back and change filnams_trendy_v11_S1.csv back