Comments (3)
I'm adding the priority
queue to backlog and singles, but also creating a separate container with some workers solely handling priority
(similar to the way blazegraph
queue is setup)
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Getting and error:
modules.beautify.beautify.beautify({'disable_amr': False, 'i': '/datastore/2017-06-30-21-53-27-595283-GCA_000023365.1_ASM2336v1_genomic.fna', 'disable_vf': False, 'disable_serotype': False, 'pi': 90, 'options': {'pi': 90, 'amr': False, 'serotype': True, 'vf': True}}, '/datastore/2017-06-30-21-53-27-595283-GCA_000023365.1_ASM2336v1_genomic.fna_rgi.tsv_rgi.p') from multiples
b50e9cb9-8f34-43dd-82c8-f43282147c67
Failed 3 days ago
Traceback (most recent call last):
File "/opt/conda/envs/backend/lib/python2.7/site-packages/rq/worker.py", line 700, in perform_job
rv = job.perform()
File "/opt/conda/envs/backend/lib/python2.7/site-packages/rq/job.py", line 500, in perform
self._result = self.func(*self.args, **self.kwargs)
File "./modules/beautify/beautify.py", line 124, in beautify
json_r = check_alleles(json_r)
File "./modules/beautify/find_widest.py", line 126, in check_alleles
raise Exception('The Panadas DF from gene_dict is empty.')
Exception: The Panadas DF from gene_dict is empty.
The same error happened in the past when rgi wasnt run before beautifying. However, it looks like the pickle dump /datastore/2017-06-30-21-53-27-595283-GCA_000023365.1_ASM2336v1_genomic.fna_rgi.tsv_rgi.p
isnt empty.
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Added in #137
from spfy.
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