Welcome!
This repo stores codes and data for the paper:
Shu Yang, Junwen Wang, Raymond Ng. Inferring RNA sequence preferences for poorly studied RNA-binding proteins based on co-evolution. BMC Bioinformatics. 2018.
It contains:
- Scripts and instructions for the KNN method presented in the paper. And supplementary data for performance results.
- An extended implementation of the RCK program, called KNN-RCK which takes an input PWM as its sequence model.
- Predicted sequence preference in the form of PWM for ~1000 poorly studied proteins which have no binding preference information available before.