sylvainschmitt / treemutation Goto Github PK
View Code? Open in Web Editor NEWMutation in the tropical tree canopy
Home Page: https://sylvainschmitt.github.io/treemutation/
treemutation's People
Watchers
treemutation's Issues
Transcriptomics
Transcriptonia & co
- Dvlp workflow
- Achmea
- Cecropia
- Symphonia
Mutations detection
Mutations detection
Experiment
Simulation
- Reference
- Diploid genome
- Mutations
- Reads
Detection
- Index
- Reads QC
- Trimming
- Mapping
- Alignment QC
- Mutations call
- Metrics
- Graphs
Virtual
- Run
Empirical
- Validate protocol
- Align Swiss data on 3P for Chr01
- Choose strategy for empirical data
- Ask Christophe for unpublished data (use written M&M and eventually virtual results)
- Run Swiss data
- Run Bordeaux data (maybe after writing)
Writing
- M&M Virtual
- M&M empirical
- Results
- Introduction
- Discussion
Sampled data
- Test virtual sampling for Angela
- Run workflow for Angela
- Run workflow for Sextonia
Genome assembly
Genome assembly
- Sequencing
- awaiting CNRGV answer
- PacBio HiFi
- Optical map
- Illumina HiSeq
- Assembly workflow( (singularity + snakemake)
- Ludo meeting
- data transfer to genotoul
- develop, dry run, test
- Annotation
Misc
- Regeneration
-
rcontrollworkshop - Guyafor - TreeGrowth
- CDI CIRAD?
- Empty office / clean mails
- Genotoul access
- Transfer Transcriptomics to Niklas
- Update website
TreeMutation
Msc
- Letter
- CL
- Core review
- All review
- Final review
Other
- Save
- RNAseq
- SSRseq
rcontroll
rcontroll
- Review of the package and its documentation by the co-authors Sylvain & all
- rcontroll workshop Sylvain & Guillaume
- Writing of the manuscript Sylvain & Guillaume & others
- Reviewing the manuscript All
- Submission of the manuscript Sylvain
AMSC
- Hosts
- Sites
- Contact
- EBU 13/7
- AMSC 15/9
hydroITV
hydroITV
- First interpretations
- Meeting
- Outlines
- Distribute
- Write
- Review
- Submit
TreeGrowth
TreeGrowth
- Rerun
- Explore sampling
- Write
- Review
- bioRxiv
- PCI
- Journal (Ecol. Let., Oikos)
AMSC2
- FTH
- TROLL-G
- 2BRADseq
- AAP CEBA & others
Sampling
Sampling
Sextonia rubra
- sampling
- 20/04 meeting
Dicorynia guyanensis
- selection
- fast architecture
- sampling
- TLS
- DLS
- architecture
- dating branches?
Index
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