syssynbio/hsm-web

Website associated with the "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."

hsm-web - Biophysical prediction of protein-peptide interactions and signaling networks using machine learning.

This repository contains the code associated with the website for Biophysical prediction of protein-peptide interactions and signaling networks using machine learning.. The website is located at proteinpeptide.io. The website depends on downloading pre-processed data from figshare and placing the directories into assets.

Reference

Please reference the associated publication:

Cunningham, J.M., Koytiger, G., Sorger, P.K., & AlQuraishi, M. "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning." Nature Methods (2020). doi:10.1038/s41592-019-0687-1.

See also

• Paper code:aqlaboratory/hsm

Credits

• Protein Viewer: 3Dmol.js
• Network Viewer: D3.js
• Styling / Layout: Bootstrap stack

Funding

This work was supported by the following sources:

Funder	Grant number
NIH	U54-CA225088
NIH	P50-GM107618
DARPA / DOD	W911NF-14-1-0397

License

This repository is released under an MIT License