szcf-weiya/frlr

An R package: Fitting Repeated Linear Regressions

frlr's Issues

frlr.cpp:268:5: error: 'omp_set_num_threads' was not declared in this scope

* checking whether package 'fRLR' can be installed ... ERROR
Installation failed.
See 'd:/RCompile/CRANincoming/R-devel/fRLR.Rcheck/00install.out' for details.

* installing *source* package 'fRLR' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
using C++ compiler: 'g++.exe (GCC) 12.2.0'
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c frlr.cpp -o frlr.o
frlr.cpp:144: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  144 |   # pragma omp parallel for schedule(dynamic) // faster!!!
      | 
frlr.cpp:331: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  331 |   # pragma omp parallel for schedule(dynamic) // faster!!!
      | 
frlr.cpp: In function 'Rcpp::List frlr1(SEXP, SEXP, SEXP, int)':
frlr.cpp:91:5: error: 'omp_set_num_threads' was not declared in this scope
   91 |     omp_set_num_threads(num_threads);
      |     ^~~~~~~~~~~~~~~~~~~
frlr.cpp: In function 'Rcpp::List frlr2(SEXP, SEXP, SEXP, SEXP, SEXP, int)':
frlr.cpp:268:5: error: 'omp_set_num_threads' was not declared in this scope
  268 |     omp_set_num_threads(num_threads);
      |     ^~~~~~~~~~~~~~~~~~~
make: *** [D:/RCompile/recent/R/etc/x64/Makeconf:289: frlr.o] Error 1
ERROR: compilation failed for package 'fRLR'
* removing 'd:/RCompile/CRANincoming/R-devel/lib/fRLR'
* restoring previous 'd:/RCompile/CRANincoming/R-devel/lib/fRLR'

warning: stack imbalance

email from CRAN

On 16/07/2021 09:28, Prof Brian Ripley wrote:

Dear maintainer,

Please see the problems shown on
https://cran.r-project.org/web/checks/check_results_fRLR.html.

Please correct before 2021-07-30 to safely retain your package on CRAN.

The CRAN Team

This started with Rcpp's update to 1.0.7, and seems to be (on most platforms) corrupting R's memory allocations which has made it impossible so far to get a handle on it.

--
Brian D. Ripley, [email protected]
Emeritus Professor of Applied Statistics, University of Oxford

and the checking details are https://cran.r-project.org/web/checks/check_results_fRLR.html

checking re-building of vignette outputs ... [30m/35m] WARNING
Error(s) in re-building vignettes:
--- re-building ‘fRLR.Rnw’ using Sweave

error in r-patched-solaris-x86

https://www.r-project.org/nosvn/R.check/r-patched-solaris-x86/fRLR-00check.html

using R version 4.1.0 Patched (2021-07-20 r80649)
using platform: i386-pc-solaris2.10 (32-bit)
using session charset: UTF-8
using option ‘--no-stop-on-test-error’
checking for file ‘fRLR/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘fRLR’ version ‘1.2’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘fRLR’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... ERROR
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘fRLR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/ripley/R/Lib32/fRLR/libs/fRLR.so':
  ld.so.1: R: fatal: relocation error: file /home/ripley/R/Lib32/fRLR/libs/fRLR.so: symbol GOMP_loop_dynamic_start: referenced symbol not found
Execution halted
DONE

warning during check: A complete check needs the 'checkbashisms' script.

https://stackoverflow.com/questions/63698128/r-package-check-warning-a-complete-check-needs-the-checkbashisms-script

Some checks can be done by the checkbashisms Perl script at https://sourceforge.net/projects/checkbaskisms/files, also available in most Linux distributions in a package named either ‘devscripts’ or ‘devscripts-checkbashisms’:
https://cran.r-project.org/doc/manuals/R-exts.html#Configure-and-cleanup

sudo apt install checkbashisms