Takshan's Projects
A PyTorch and TorchDrug based deep learning library for drug pair scoring.
Facilitates searching, screening, and organizing large chemical databases
Open-source demos hosted on Dash Gallery
Optimizing Chemical Reactions with Deep Reinforcement Learning
Refined and extended version of ChemTS
[Course-2021] taught at Duke MIDS. This is also a Coursera Course that covers MLOps, ML Engineering and the foundations of Cloud Computing for Data Science.
Containers for machine learning
Composition-Conditioned Crystal GAN pytorch code
Files used in TMP Chem videos on computational chemistry
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
๐ณ๐๐คCookiecutter template to launch an awesome dockerized Data Science toolstack (incl. Jupyster, Superset, Postgres, Minio, AirFlow & API Star)
Template for a data science project
testing
The merlin dataloader lets you rapidly load tabular data for training deep leaning models with TensorFlow, PyTorch or JAX
Binding Affinity Prediction using Deep learning models
Molecular optimization by capturing chemistโs intuition using the Seq2Seq with attention and the Transformer
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
This repository contains implementations and illustrative code to accompany DeepMind publications
Set up deep learning environment in a single command line.
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
Deep Replay - Generate visualizations as in my "Hyper-parameters in Action!" series!
DeepSMILES - A variant of SMILES for use in machine-learning
A collection of Deep Learning projects and resources
Personal Devcontainer
Python package for graph neural networks in chemistry and biology
A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics
Deep learning for molecules and materials book