tamilyn/shiny-pesame

shiny-pesame's Issues

Under 'Comparison Method' the option for none/raw is not available

dockerize

rstudio instance with all the required libraries preinstalled.

Citations are not working properly

Alex needs to work on this.

'Samples are rows' checkbox is not showing when loading from csv file

Grouping of discrete factors is not available

Plot tab need to indicate factor levels corresponding to each side of the plot

Checking for duplicate row names is broken, test using data_otut.csv

In Analyze tab, Data tab should be called 'Table' instead

Loading excel files is broken

on load of 'otut_f.xlsx' the following error is thrown:

Warning: Error in : Missing file extension.
Stack trace (innermost first):
93: excel_format
92: readxl::excel_sheets
91: reactive:availableSheets [fileImporterModule.R#320]
80: availableSheets
79: renderUI [fileImporterModule.R#84]
78: func
77: origRenderFunc
76: output$inputFile-controls
1: runApp
File otut_f.xlsx was uploaded
Warning: Error in : Missing file extension.
Stack trace (innermost first):
93: excel_format
92: read_excel_
91: readxl::read_excel
90: reactive:rawDataForSheet [fileImporterModule.R#175]
79: rawDataForSheet
78: reactive:dataForExcel [fileImporterModule.R#292]
67: dataForExcel
66: loadDataFile [fileImporterModule.R#362]
65: observeEventHandler [fileImporterModule.R#374]
1: runApp
ERROR: [on_request_read] connection reset by peer