Comments (3)
keenhl
commented on September 14, 2024
Do you know if you have the package ggplot2 installed in R?
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CharleneZ95
commented on September 14, 2024
Set environment for R solved this,
export PATH=/path/to/R/:$PATH cellphonedb plot dot_plot --rows in/rows.txt --columns in/columns.txt
Hope this helps~
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mvento
commented on September 14, 2024
@daisyyr Did you fix this issue?
If it didn't work well, you can try to use this docker image https://hub.docker.com/r/ydevs/cellphonedb
Best
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Related Issues (20)
- Gene format missmatch. HOT 1
- Backwards Interactions HOT 1
- Should we sub-sample cells for cellphoneDB?
- threshold for setting means in mean.txt and significant_means.txt
- dot_plot cant show labels HOT 1
- read count.h5ad error HOT 2
- Error processing Meta data HOT 1
- Dot plot problem: Error in all_pval[match(selected_rows, intr_pairs), selected_columns] HOT 3
- error : ValueError: Columns must be same length as key HOT 6
- mismatch
- Running real time pathway analysis error
- How to order the heatmap plot?
- Can not got a file of "pvalues.txt"
- cell number and molecular interaction
- error in analysis using self database
- pvalue is 1 or 0 HOT 1
- Error when using plot function HOT 5
- Input error cellphonedb statistical analysis HOT 2
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