[ERROR] Invalid Counts data

[teichlab]

[ERROR] Invalid Counts data

[keenhl]

Is the column order in the counts file the same as the row order in the meta file?

[cyanching]

Hey keenhl, thank you for your reply! I already solved the issue by adjusting the formating of my count file!

[keenhl]

Good. Thanks for the update.

[singcell]

@cyanching Can you share how your formatting solved the problem. i have the same issue.

[cyanching]

@cyanching Can you share how your formatting solved the problem. i have the same issue.

I corrected the format of my count file, so I have (1,1) as 'Gene', then filed the first col with ensemble gene ID, the first row with cell ID, the rest with count data.

[zhanglab2008]

@cyanching Can you share how your formatting solved the problem. i have the same issue.

I corrected the format of my count file, so I have (1,1) as 'Gene', then filed the first col with ensemble gene ID, the first row with cell ID, the rest with count data.

Great tip! I also had the same error when I ran the codes from the Nature Protocol paper. I solved it using your methods. Thanks!