Comments (3)
mvento
commented on August 9, 2024
Hi @ktravaglini,
We will try to fix it in the future, sorry for the inconvenience.
Thanks for using CellPhoneDB
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aditisk
commented on August 9, 2024
Hi @mvento, is there any way yet for users to use a custom list of interactions ? @ktravaglini were you able to use a custom list yet or is that feature still upcoming ?
Thank you.
from cellphonedb.
mvento
commented on August 9, 2024
Hi @aditisk,
Now you can use your custom list when you generate your custom database.
Please, update CellPhoneDB version and check the documentation:
https://github.com/Teichlab/cellphonedb#examples-for-user-specific-custom-database
Best
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Related Issues (20)
- Gene format missmatch. HOT 1
- Backwards Interactions HOT 1
- Should we sub-sample cells for cellphoneDB?
- threshold for setting means in mean.txt and significant_means.txt
- dot_plot cant show labels HOT 1
- read count.h5ad error HOT 2
- Error processing Meta data HOT 1
- Dot plot problem: Error in all_pval[match(selected_rows, intr_pairs), selected_columns] HOT 3
- error : ValueError: Columns must be same length as key HOT 6
- mismatch
- Running real time pathway analysis error
- How to order the heatmap plot?
- Can not got a file of "pvalues.txt"
- cell number and molecular interaction
- error in analysis using self database
- pvalue is 1 or 0 HOT 1
- Error when using plot function HOT 5
- Input error cellphonedb statistical analysis HOT 2
- difficulty in generating custom database with protein complex
- Unexpected error after [Clustering Statistical Analysis]
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