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followers: 132.0 following: 65.0 repos: 159.0 gists: 90.0

Name: Andrea Telatin

Type: User

Company: Quadram Institute Bioscience

Bio: Bioinformatician @quadram-institute-bioscience

Twitter: telatin

Location: Norwich, UK

Blog: https://telatin.github.io/

Hello! 👋

I'm a bioinformatician working on microbial (meta)genomics :DNA:

🤖 I like tinkering with nextflow:

📦 Some tools are available via Bioconda :

🧬 🚀 seqfu	⛰️ bamtocov	🖌️ dadaist2	🛠️ qax
Fast toolkit for FASTX manipulation and inspection	to extract coverage tracks from BAM files	to analyze 16s/ITS from reads to R	utilities for Qiime2 artifacts

📖 I use GitHub also for training material

📓 microbiome bioinformatics	🧔 Personal website	💻 bash training	🎥 Companion videos
Some tutorials	A small blog	Toy files to practice Bash	A Youtube channel

I'm using Mastodon

Andrea Telatin's Projects

seqfu2-stats

seqfulib

Nim Library for sequence (protein/nucleotide) bioinformatics

sequence-formats

singularities

Scripts and notes for singularity containers used for bioinformatics analyses

snippy

:scissors: :zap: Rapid haploid variant calling and core genome alignment

squid

telatin

telatin.github.io

telatin.github.plong

Setup a simple new indieweb site on a domain name in mere minutes with this project.

test-pyfastx

tii

Like 'tee', but for PasteBin.com

tpc2020

Lightning talk for The Perl and Raku Conference in the Cloud

trace2snps

trace2snps - a tool to batch validate NGS variants using Sanger sequencing

usearch11_docs

Markdown documentation for USEARCH 11 (see drive5.com for offical docs)

utils

scripts for small tasks concerning metagenomics and data re-formatting

virsorter

Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)

virsorter2

customizable pipeline to identify viral sequences from (meta)genomic data

vsearch_example

An example of 16S analysis using VSEARCH

wordle-it

Italian version of Wordle

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