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new-stuff

Some new things for the Cambridge course

nextstrain.org

The Nextstrain website

nk-landscapes

Efficient implementation of NK landscapes

numpy

Numpy main repository

objc-client

Objective-C client library for Fluidinfo

obrowser-safari-extension

open-it-later

A Chrome extension. When you click on any link, or open a tab for new URL, the current tab will immediately be closed and the desired URL will be displayed in a new tab at some random point in the future (at least 15 seconds, at most 5 minutes).

package_control_channel

The default channel file for the Sublime Package Control package manager. Fork, add your repository and send a pull request.

peerindex-import

Import of PeerIndex data

phantom-jasmine

a Jasmine runner for Phantom.js

phyml

PhyML -- Phylogenetic estimation using (Maximum) Likelihood

precedence

Simple shell scripts to print tables of operator precedence and associativity for different programming languages

prjna692319_public

Analysis of Antarctica sequencing samples contaminated with SARS-CoV-2

pyfaidx

Efficient pythonic random access to fasta subsequences

pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

pystdin

Wrap command-line Python in a loop over standard input

python-docx

Reads, queries and modifies Microsoft Word 2007/2008 docx files.

python-newick

python package to read and write the Newick format

python-practice

One step at a time

python-tumblpy

A Python Library to interface with Tumblr v2 REST API & OAuth

repeated-vaccination

Simple code for Bayesian work on lineage switching and Influenza B vaccines

rosalind

Solutions to some Rosalind problems

rpnpy

A reverse-Polish notation calculator for Python

sailthru-python-client

Python client for Sailthru

scikit-bio

scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.

scikit-learn

scikit-learn: machine learning in Python

scipy

Scipy library main repository

secret-santa

self-describing-json

Given JSON on stdin, writes a length-2 JSON list to stdout containing a description of the input, followed by the input

seq_crumbs

Little sequence file utilities meant to work within Unix pipelines