CLIPflexR is a R wrapper for the CLIP Tool Kit (CTK) and additional functions to call other external libraries into an R environment.
CLIPflexR makes use of the Herper library to install conda dependencies to your machine within a conda environment using the reticulate libraries.
The CTK toolkit is installed as part of the CLIPflexR install_ctk() function.
install.packages("devtools")
devtools::install_github("kathrynrozengagnon/CLIPflexR")
devtools::install_github("RockefellerUniversity/Herper")
Herper::install_CondaSysReqs("CLIPflexR")
CLIPflexR::install_ctk()
library(CLIPflexR)
## CLIPflexR_0.1.18 conda env found at /Users/kathryn/Library/r-miniconda/envs/CLIPflexR_0.1.18
## ctk found at /Users/kathryn/Library/r-miniconda/envs/CLIPflexR_0.1.18/bin/ctk
## czplib found at /Users/kathryn/Library/r-miniconda/envs/CLIPflexR_0.1.18/lib/czplib
getOption("CLIPflexR.condaEnv")
## [1] "/Users/kathryn/Library/r-miniconda/envs/CLIPflexR_0.1.18"
getOption("CLIPflexR.ctk")
## [1] "/Users/kathryn/Library/r-miniconda/envs/CLIPflexR_0.1.18/bin/ctk"
getOption("CLIPflexR.czplib")
## [1] "/Users/kathryn/Library/r-miniconda/envs/CLIPflexR_0.1.18/lib/czplib"