tiagoantao/lositan

Lositan/Mcheza selection detection workbench

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lositan's Issues

Lositan running help needed

I am desperately looking to ways to run 'Lositan' with my microsat data. I am using windows 7 32 bit OS and also separately Windows10 64-bit system. I have tried every means to make the original 'Lositan' get launched using java v. 8. But I run out of all lucks. I came across this offline stuff of 'Lositan', which I have downloaded and extracted in my Windows 7 32-bit OS computer. Tried to run 'runLocal.bat' file and also the 'selwb4.jnlp' file by double-clicking the executables. However, again no luck.
Maybe I am a novice at running this kind of application in windows.
Can you please help me to run 'offline Lositan' in detailed step by step manner?
Thanks

Please sanitize your shell scripts

Running prepareLibs.sh before getLibs.sh has led to the script erasing my entire ~/ ... (Fortunately I had a very recent backup).
Line 30 of the script was what killed everything. Seriously that line is dangerous!
However, this is obviously not optimal and could be avoided by adding the following line to the beginning of all the shell scripts:

set -e

This will exit the script as soon as the first "cd" errors out and avoid doing a "cd .." afterwards
Please add it so it will not cause grief to anyone else...

Link for program is dead

Hi,

The link for the download page is dead. Where can I find this software?

Thanks,
Spencer

Lositan

When I am running software LOSITAN I am getting this error:
Segmentation fault (core dumped)
Unhandled exception in thread started by <function endRunDatacal at 0x3>
Traceback (most recent call last):
File "/home/a/.lositan/Main.py", line 341, in endRunDatacal
fst, sampSize = fdc.run_datacal(data_dir = lpath)
File "/media/a/PRACOVNI/Lositan/build/install/lositan/lib/Lib/Bio/PopGen/FDist/Controller.py", line 94, in run_datacal
fst = my_float(fst_line[4])
IndexError: index out of range: 4

Please advise if there is known any solution of the issue?

Many thanks,.