toepferlab/caltrack

caltrack's Issues

No excel files created

I've been trying to run CalTrack on single cell videos of primary cardiomyocytes loaded with Cal520. I have .czi files, but only got anything to work by manually converting them to tif before running the main script. I then make it through the main script, and a trace is extracted. I'm getting hung up on the data analysis portion, and excel files are never created. I receive the following error message near the end:
Done! Results saved in folder "calcium_analysis" in :/Users/kerrie/Documents/MATLAB/CalTrack-master/Images/calcium_analysis

noisy signal detected and excluded.
Unrecognized field name "name".

Error in DataAnalysis (line 472)
names = {single_traces.name}';

Error in main (line 228)
DataAnalysis

Can anyone help with this?

Problems running the program

Hello,

I hope all is well.

I have calcium transient traces that I'd like to analyze, but I keep getting the following error
"Please select the folder with the calcium traces
Error using sheetnames (line 36)
Unable to find or open 'C:\Users\raash\Desktop\caltrack\CalTrack-master\scripts\MultiCell\CalciumData_MultiCell.xlsx'. Check the
path and filename or file permissions.

Error in DataAnalysis (line 6)
s_names = sheetnames(fullfile(path,file));

Error in main (line 228)
DataAnalysis"

I have converted my STK files to TIFF using imageJ, but I can't seem to get through any further after the program asks to select a file. I do have Bio-formats downloaded as well, but I'm not sure if I'm missing anything. Can you please help?

Best,