Topic: biobakery Goto Github
Some thing interesting about biobakery
Some thing interesting about biobakery
biobakery,This repo maintains the definition files used for building singularity images remotely. Each branch maintains a different environment.
User: aroarz
Home Page: https://singularity-hub.org/collections/4903
biobakery,AnADAMA2 is the next generation of AnADAMA (Another Automated Data Analysis Management Application). AnADAMA is a tool to capture your workflow and execute it efficiently on your local machine or in a grid compute environment (ie. sun grid engine or slurm).
Organization: biobakery
Home Page: http://huttenhower.sph.harvard.edu/anadama2
biobakery,bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
Organization: biobakery
Home Page: http://huttenhower.sph.harvard.edu/biobakery_workflows
biobakery,The CCREPE (Compositionality Corrected by REnormalizaion and PErmutation) package is designed to assess the significance of general similarity measures in compositional datasets.
Organization: biobakery
Home Page: http://huttenhower.sph.harvard.edu/ccrepe
biobakery,A collection of conda build recipes
Organization: biobakery
biobakery,GraphQL server and utilities scripts for the BIOM-Mass portal
Organization: biobakery
biobakery,High-quality circular representations of taxonomic and phylogenetic trees
Organization: biobakery
Home Page: https://segatalab.github.io/tools/graphlan
biobakery,Hierarchical All-against-All association testing is designed as a command-line tool to find associations in high-dimensional, heterogeneous datasets.
Organization: biobakery
Home Page: http://huttenhower.sph.harvard.edu/halla_legacy
biobakery,
Organization: biobakery
Home Page: http://jdrf1.rc.fas.harvard.edu/
biobakery,MaAsLin2: Microbiome Multivariate Association with Linear Models
Organization: biobakery
Home Page: http://huttenhower.sph.harvard.edu/maaslin2
biobakery,Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
Organization: biobakery
Home Page: http://huttenhower.sph.harvard.edu/melonnpan
biobakery,MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
Organization: biobakery
Home Page: http://segatalab.cibio.unitn.it/tools/metaphlan/index.html
biobakery,MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome
Organization: biobakery
Home Page: http://huttenhower.sph.harvard.edu/MetaWIBELE
biobakery,MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies
Organization: biobakery
Home Page: http://huttenhower.sph.harvard.edu/mmuphin
biobakery,Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
Organization: biobakery
Home Page: https://huttenhower.sph.harvard.edu/phylophlan
biobakery,Stab at a github.io page for the Physalia Workshop
Organization: biobakery
biobakery,ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then search for these markers in metagenomic data and determine the presence and abundance of the protein families of interest.
Organization: biobakery
Home Page: http://huttenhower.sph.harvard.edu/shortbred
biobakery,
Organization: broadinstitute
biobakery,Large-scale Benchmarking of Microbial Multivariable Association Methods
User: himelmallick
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