Topic: dartseq Goto Github
Some thing interesting about dartseq
Some thing interesting about dartseq
dartseq,omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data). It only works with BLAST V 2.7 or under.
User: btalamantesbecerra
dartseq,omicR for R studio creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio⦠etc). You can use reference genomes from NCBI, or any other genetic sequence that you would like to use as reference.
User: btalamantesbecerra
dartseq,Windows Executable. This package has the following fuctions: 1) Create fasta files. 2) Download genomes from NCBI.3) Create genome database for BLAST. 4) Run BLASTn and selects the best match per sequence. 5) Alternative step: Select the best match from a BLAST
User: btalamantesbecerra
dartseq,Populations genomics in R, Workshop in Hobart, Tasmania
User: thierrygosselin
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