triangleczh/variantcallingmachinelearning

Variant Calling

Introduction

Implementation of Variant Calling This directory currently keeps example of generated data, and back-up folder of working directory

Structure (useful ones only)

• ml-2000/ original folder holding 200 million reads' npz(all ten snapshots)
• ml-last/ holding whole process of 6000 data generated by the newest script extract_csv.py
  • predict/ result of running script prediction.py
  • result/ holds the best weight for training(test_7.weights.hdf5)
  • csv/ result of running script convert_npy_csv.py
• bal23/ hold backup copy of scripts from bal23, they can be used directly if copied to a working directory
• training/ hold backup copy of scripts from ~/Simon/training, they can be used directly if copied to a working directory
• abandoned-*/ abandoned directories, too large that cannot directly remove

Other Information

Other useful folders: bal4:/home/user1/Simon/training bal23:/dev/shm/