Code, data and figures for onepager describing the methodology of making occurrence cubes.
The repository structure is based on Cookiecutter Data Science. Files and directories indicated with GENERATED
should not be edited manually.
โโโ README.md : Description of this repository
โโโ LICENSE : Repository license
โโโ aoo-paper.Rproj : RStudio project file
โโโ .gitignore : Files and directories to be ignored by git
โ
โโโ data
โ โโโ raw : Occurrence data as downloaded from GBIF GENERATED
โ โโโ processed : occurrence data cube and taxonomic compendium GENERATED
โ โโโ external
โโโ utm1_bel : EEA reference grid at 1km scale GENERATED
โโโ src
โโโ make_cube_reynoutria.R : Script to generate occurrence cube
โโโ add_uncertainty_1000m.R : Script to show occurrences with default uncertainty of 1000m
โโโ table_taxa_in_occurrences.R : Script to generate data.frame with all taxa in occurrence cube
โโโ code_occurrence-as-circles-and-random-pts-on-grid.R : Script to show the method of assigning an occurrence to a grid cell
โโโ project_cube_to_2d.R : Script to generate the subfigures (B) (C) and (D) about the projection of the cube on the 2d planes
MIT License for the code and documentation in this repository.