tripal/mainlab_tripal

Mainlab Tripal Data Display: extending the display of a Tripal database

Mainab Tripal Data Display

Mainlab Tripal Data Display has been moved to GitLab. Please visit GitLab at the following URL for the latest code:

https://gitlab.com/mainlabwsu/mainlab_tripal

mainlab_tripal's Issues

Undefined table: 7 ERROR: relation "chado_stock" does not exist LINE 1:

Notice: Undefined property: stdClass::$all_relationships in include() (line 22 of /var/www/html/sites/all/modules/mainlab_tripal/theme/cottongen/mainlab_organism_base.tpl.php). Warning: key_exists() expects parameter 2 to be array, null given in include() (line 27 of /var/www/html/sites/all/modules/mainlab_tripal/theme/cottongen/mainlab_organism_base.tpl.php). Warning: key_exists() expects parameter 2 to be array, null given in include() (line 32 of /var/www/html/sites/all/modules/mainlab_tripal/theme/cottongen/mainlab_organism_base.tpl.php). Warning: key_exists() expects parameter 2 to be array, null given in include() (line 37 of /var/www/html/sites/all/modules/mainlab_tripal/theme/cottongen/mainlab_organism_base.tpl.php). Warning: array_key_exists() expects parameter 2 to be array, null given in chado_expand_var() (line 753 of /var/www/html/sites/all/modules/tripal/tripal_core/api/tripal_core.chado_variables.api.inc). PDOException: SQLSTATE[42P01]: Undefined table: 7 ERROR: relation "chado_stock" does not exist LINE 1: ...cvterm_id = type_id) AS type, (SELECT nid FROM chado_stoc... ^: SELECT count(*) FROM (SELECT uniquename, (SELECT name FROM chado.cvterm WHERE cvterm_id = type_id) AS type, (SELECT nid FROM chado_stock WHERE stock_id = stock.stock_id) AS nid FROM chado.stock WHERE organism_id = (SELECT organism_id FROM chado.organism WHERE genus = :genus AND species = :species) AND (type_id NOT IN (SELECT cvterm_id FROM chado.cvterm WHERE name IN ('sample', 'clone') AND cv_id = (SELECT cv_id FROM chado.cv WHERE name = 'MAIN') ) )) A; Array ( [:genus] => Citrus [:species] => sinensis ) in chado_query() (line 1538 of /var/www/html/sites/all/modules/tripal/tripal_core/api/tripal_core.chado_query.api.inc).

single organism parameter not seen in mainlab_organism_base.tpl.php

If an organism has only one entry in the chado.organismprop table, this property will not appear on the organism summary page generated by theme/cottongen/mainlab_organism_base.tpl.php
bugfix is on line 14 of theme/cottongen/mainlab_organism_base.tpl.php