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Workflows for analyzing data with the GeomxTools package and subsequent GeoMx related packages

License: MIT License

geomxworkflows's Introduction

GeoMxWorkflows

Scope & Overview

GeoMxWorkflows is a package that contains analysis vignettes for analyzing data from NanoString GeoMx Digital Spatial Profiler (DSP). It is intended as a instructive package, which demonstrates the application of other open source packages for the purposes of interpreting GeoMx data.

Branches

The master branch is the stable version of the Bioconductor package.

The dev branch is under active development and no guarantee is made on usability at any given time.

Citation

GeomxTools

Ortogero, N.; Yang, Z.; Vitancol, R.; Griswold, M.; Henderson, D. GeomxTools: NanoString GeoMx Tools. R Package Version 1.0.0. NanoString Technologies Inc.; Seattle, WA 98109, USA. 2021.

GeoMxWorkflows

Reeves, J.W.; Divakar, P.; Ortogero, N.; Griswold, M.; Yang, Z.; Zimmerman, S.; Vitancol, R.; and Henderson, D. GeoMxWorkflows: GeoMx Digital Spatial Profiler (DSP) data analysis workflows. R Package Version 1.0.0. NanoString Technologies Inc.; Seattle, WA 98109, USA. 2021.

License

This project is licensed under the MIT license.

geomxworkflows's People

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