tryweirdier/sandbox

sandbox environment for engineering protein sequences with synthetic fitness functions.

This is not an officially supported Google product.

SLIP - Synthetic Landscape Inference for Proteins

SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.

Status

In progress

Instructions

Tested on python >= 3.7

We recommend installing into a virtual environment to isolate dependencies (see https://docs.python.org/3/library/venv.html).

python3 -m venv env
source env/bin/activate

To install:

pip3 install -q -r requirements.txt

To run the unit tests:

bash -c 'for f in *_test.py; do python3 $f || exit 1; done'