Comments (2)
Hello!
If your replicates correlate well (one way to test this is to calculate the proportion of 'reproduced peaks' between them), then you can merge them together, call peaks on your merged replicate and perform PEKA on merged data.
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Thanks so much! Great idea!
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Related Issues (8)
- Puzzle about the Figure 1g about Heatmaps showing relative occurrences (RtXn) and PEKA-scores for top 40 k-mers HOT 4
- Example input files? HOT 4
- PEKA on intronless genomes HOT 6
- Working with cross-link sites identified using iCount with overlapping indicies HOT 6
- test data works, but own data gives: ValueError: Overlapping IntervalIndex is not accepted. HOT 3
- Hi, can you provide sample data to see whether it works or not? Very appreciate for that. HOT 1
- ValueError: Overlapping IntervalIndex is not accepted. HOT 6
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