Name: Ulrike Boehm
Type: User
Company: HHMI Janelia Research Campus
Bio: Physicist, Optical Scientist & Data Scientist who develops hardware and software tools for imaging and microscopy.
Twitter: Ulrike_Boehm
Location: Ashburn, VA
Blog: http://ulrikeboehm.org/
Ulrike Boehm's Projects
Directory of tutorials and open-source code repositories for working with Keras, the Python deep learning library
This checklist guides you through Machine Learning projects.
Doing Math With Python by Amit Saha
Handout for the tutorial "Creating publication-quality figures with matplotlib"
Notes from weekly napari meetings
Fast and Accurate 3D PSF Computation for Fluorescence Microscopy
Napari PyQt5 and VisPy based GUI plugin
NCBI Hackathon Repos
NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
NEUBIAS Bioimage Analyst School 2019
A collection of tools for painting super-resolution images
This repository will contain Python files to calculate PSFs for superresolution microscopy (STED, RESOLFT, 4Pi Microscopy, etc.)
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
Python serial port access library
This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biological imaging.
Python for Data Analysis by Wes McKinney
Python Data Science
The HTML Presentation Framework
scientific python training with pandas, scipy, and scikit-learn
Tutorial material and instruction for scipy 2018 jupyterlab tutorial
pymc3 implementation of single molecule FRET hidden Markov model analysis
Toolkit for Bayesian hidden Markov model (BHMM) analysis of single-molecule force spectroscopy data
scientific python training with scikit-image
SMolPhot is an open-source operating system independent data analysis and visualization software package for data acquired by single molecule localization microscopy methods such as photo-activation localization microscopy. SMolPhot is written in python which make it platform independent and easy to develop open source software package.
A primer on software development best practices for computational chemistry
STORM movie analysis code