umg-minai/crt

Observational study of central venous catheter-related thrombosis

Observational study of central venous catheter-related thrombosis (CRT)

We use guix to ensure an reproducible computing environment.

Bootstrap

Guix on debian

sudo apt install make git guix

Fetch sources

git clone [email protected]:umg-minai/crt.git

Build manuscript

Running make the first time will take some time because guix hast to download the given state and build the image.

make

Modify the manuscript

All the work has to be done in the sections/*.Rmd files.

Make targets

• make or make manuscript produces an .html file in output/.
• make dist produces a .docx in distribute/ which could be send to the co-authors.
• make gh-pages updates the gh-pages branch to the latest manuscript.
• make clean removes all generated files.

Update data

If the raw data changed, you have to call make regenerate-data manually (The data file doesn't depend on the raw data to avoid errors if others who don't own the raw data checkout the repository.)

Contact/Contribution

You are welcome to:

• submit suggestions and bug-reports at: https://github.com/umg-minai/crt/issues
• send a pull request on: https://github.com/umg-minai/crt/
• compose an e-mail to: [email protected]

We try to follow:

• Conventional Commits
• Semantic Line Breaks