Comments (3)
AAvalos82
commented on July 17, 2024
Update, modifying the assocTestSingle.R() function call to exclude the order = "selection" argument when class(gdsobj@data) == "MatrixGenotypeReader" worked without a problem. I am sure a more elegant solution can be applied to be mindful of the API variation in getGenotypeSelection().
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smgogarten
commented on July 17, 2024
Thanks for the bug report. I wasn't thinking about MatrixGenotypeReader when I wrote that function, but it should be supported. (NcdfGenotypeReader has never been supported in GENESIS; I should also make sure that is adequately documented.)
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smgogarten
commented on July 17, 2024
Fixed in GWASTools via smgogarten/GWASTools@7d26803. Also added documentation and a unit test in 4c25a5f
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Related Issues (20)
- ERROR:unused arguments (two.stage = TRUE, norm.option = "all", rescale = "residSD") HOT 2
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