Comments (3)
We have a unit test for multiple matrices, so it does run with a trivial example. Unfortunately that means the issue is more difficult to solve since it's related to the specifics of the data.
from genesis.
Hmmm. The fitNullModel function did work using an earlier version of GENESIS, so I don't think this is the data. Could it be related to the type of outcome? we looked at it today with a binary outcome (family = "binomial").
from genesis.
Do you have a log you can share? It certainly has worked with multiple matrices in the past, and I don't think we've made any changes that would have affected this.
from genesis.
Related Issues (20)
- Error in assocTestSingle() results when covariate is confounded with SNP genotype. HOT 6
- pcrelateToMatrix slow on 50k samples HOT 10
- Error in seqVCF2GDS(vcf.files, gds.file, verbose = FALSE) HOT 1
- correctK2() drops samples under specific conditions HOT 1
- Estimate PVE HOT 1
- add check in varCompCI that family is gaussian
- pcrelate REDUCE error while calculating individual AF betas HOT 8
- analysis pipeline for chromosome X HOT 1
- ERROR:unused arguments (two.stage = TRUE, norm.option = "all", rescale = "residSD") HOT 2
- Error when running the pcrelate function HOT 2
- High Memory Consumption with Large Dataset in PC-Relate HOT 1
- Conditional analysis HOT 1
- HOW to FIX - PCAir excludes all my SNPs because there is no chromosome information HOT 1
- Error using assocTestAggregate HOT 1
- Issue with PCAir - Segmentation fault (core dumped) HOT 1
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- pcrelate: error with rbindlist() HOT 1
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from genesis.