vaa3d/release

Binary releases of Vaa3D and related software components

release

Binary releases of Vaa3D and related software components. Please visit the Release page ( https://github.com/Vaa3D/release/releases/ ) . Latest change of this page August 17, 2022.

The newly developed Vaa3D-x version has update the development environment from Qt4 to Qt6 and has currently obsolete Visual Studio 2013 compiler.Meanwhile the new version has also provided many new features.

New Vaa3D-x Version

• Full version with plugins: Vaa3D-x.1.1.4 ( https://github.com/Vaa3D/release/releases/tag/v1.1.4 )
• Full version with plugins: Vaa3D-x.1.1.2 ( https://github.com/Vaa3D/release/releases/tag/v1.1.2 )

Previous Vaa3D Version

• Full version with plugins: v4.001 ( https://github.com/Vaa3D/release/releases/tag/V4.001 )
• Full version with plugins: v3.601 ( https://github.com/Vaa3D/release/releases/tag/v3.601 )
• Full version with plugins: v3.458 ( https://github.com/Vaa3D/release/releases/tag/v3.458 )

release's Issues

Empty plugin folders

For the 3.544 release, all of the plugin folders are empty. Please update the plugins in this release. Thank you.

Installation issues

I have failed to install Vaa3D software on my MacBook Pro. Any tips and tricks?

Can't run v3.458 on OSX mojave

Hello,

I attempted to run Vaa3D on osx mojave with no success.

Attached is the error I obtained.

Any help on this will be much appreciated.

Thanks!

Process: vaa3d64 [813]
Path: /private/var/folders/*/vaa3d64.app/Contents/MacOS/vaa3d64
Identifier: vaa3d64
Version: ???
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: vaa3d64 [813]
User ID: 501

Date/Time: 2019-02-14 23:16:03.729 -0800
OS Version: Mac OS X 10.14.3 (18D109)
Report Version: 12
Anonymous UUID:

Sleep/Wake UUID:

Time Awake Since Boot: 2500 seconds
Time Since Wake: 1700 seconds

System Integrity Protection: enabled

Notes: Translocated Process

Crashed Thread: 0

Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY

Termination Reason: DYLD, [0x1] Library missing

Application Specific Information:
dyld: launch, loading dependent libraries

Dyld Error Message:
Library not loaded: /usr/local/Trolltech/Qt-4.7.1/lib/QtGui.framework/Versions/4/QtGui
Referenced from: /private/var/folders/p8/1cf2ylh906vgk99ygxbmf0mc0000gn/T/AppTranslocation/B579ECEB-4679-49A5-BB5C-6F3E854D9F3C/d/vaa3d64.app/Contents/Frameworks/QtSvg.framework/Versions/4/QtSvg
Reason: image not found

Binary Images:
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0x7fff4c893000 - 0x7fff4c938fe7 com.apple.APFS (1.0 - 1) /System/Library/PrivateFrameworks/APFS.framework/Versions/A/APFS
0x7fff4d384000 - 0x7fff4d385ff3 com.apple.AggregateDictionary (1.0 - 1) /System/Library/PrivateFrameworks/AggregateDictionary.framework/Versions/A/AggregateDictionary
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0x7fff519aa000 - 0x7fff51a1cff7 com.apple.CoreNLP (1.0 - 130.15.22) /System/Library/PrivateFrameworks/CoreNLP.framework/Versions/A/CoreNLP
0x7fff527b3000 - 0x7fff527b7ff7 com.apple.DSExternalDisplay (3.1 - 380) <76449D22-BA27-3FB1-AD25-A290936E6DEA> /System/Library/PrivateFrameworks/DSExternalDisplay.framework/Versions/A/DSExternalDisplay
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0x7fff59d41000 - 0x7fff59d50fff com.apple.GraphVisualizer (1.0 - 5) /System/Library/PrivateFrameworks/GraphVisualizer.framework/Versions/A/GraphVisualizer
0x7fff59ea1000 - 0x7fff59f16fff com.apple.Heimdal (4.0 - 2.0) /System/Library/PrivateFrameworks/Heimdal.framework/Versions/A/Heimdal
0x7fff5b306000 - 0x7fff5b30dffb com.apple.IOAccelerator (404.2.2 - 404.2.2) <2F099589-DBE9-3442-AC93-F4AB363482A0> /System/Library/PrivateFrameworks/IOAccelerator.framework/Versions/A/IOAccelerator
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0x7fff69e6e000 - 0x7fff6a045fe7 libsqlite3.dylib (274.22) /usr/lib/libsqlite3.dylib
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0x7fff6a611000 - 0x7fff6a61dff7 libkxld.dylib (4903.241.1) /usr/lib/system/libkxld.dylib
0x7fff6a61e000 - 0x7fff6a61eff7 liblaunch.dylib (1336.240.2) /usr/lib/system/liblaunch.dylib
0x7fff6a61f000 - 0x7fff6a624fff libmacho.dylib (921) <6ADB99F3-D142-3A0A-B3CE-031354766ACC> /usr/lib/system/libmacho.dylib
0x7fff6a625000 - 0x7fff6a627ffb libquarantine.dylib (86.220.1) <58524FD7-63C5-38E0-9D90-845A79551C14> /usr/lib/system/libquarantine.dylib
0x7fff6a628000 - 0x7fff6a629ff3 libremovefile.dylib (45.200.2) /usr/lib/system/libremovefile.dylib
0x7fff6a62a000 - 0x7fff6a641ff3 libsystem_asl.dylib (356.200.4) <33C62769-1242-3BC1-9459-13CBCDECC7FE> /usr/lib/system/libsystem_asl.dylib
0x7fff6a642000 - 0x7fff6a642fff libsystem_blocks.dylib (73) <152EDADF-7D94-35F2-89B7-E66DCD945BBA> /usr/lib/system/libsystem_blocks.dylib
0x7fff6a643000 - 0x7fff6a6cbfff libsystem_c.dylib (1272.200.26) /usr/lib/system/libsystem_c.dylib
0x7fff6a6cc000 - 0x7fff6a6cfff7 libsystem_configuration.dylib (963.200.27) <94898525-ECC8-3CC9-B312-CBEAAC305E32> /usr/lib/system/libsystem_configuration.dylib
0x7fff6a6d0000 - 0x7fff6a6d3ff7 libsystem_coreservices.dylib (66) <10818C17-70E1-328E-A3E3-C3EB81AEC590> /usr/lib/system/libsystem_coreservices.dylib
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0x7fff6a6db000 - 0x7fff6a6e1ff7 libsystem_dnssd.dylib (878.240.1) <5FEA5E1E-E80F-3616-AD33-8E936D61F31A> /usr/lib/system/libsystem_dnssd.dylib
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0x7fff6a72f000 - 0x7fff6a757ff7 libsystem_kernel.dylib (4903.241.1) /usr/lib/system/libsystem_kernel.dylib
0x7fff6a758000 - 0x7fff6a7a3ff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib
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0x7fff6a801000 - 0x7fff6a816ff7 libsystem_trace.dylib (906.220.1) <4D4BA88A-FA32-379D-8860-33838723B35F> /usr/lib/system/libsystem_trace.dylib
0x7fff6a818000 - 0x7fff6a81dffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff6a81e000 - 0x7fff6a84efff libxpc.dylib (1336.240.2) /usr/lib/system/libxpc.dylib

Model: MacBookPro11,3, BootROM 149.0.0.0.0, 4 processors, Intel Core i7, 2.3 GHz, 16 GB, SMC 2.19f12
Graphics: Intel Iris Pro, Intel Iris Pro, Built-In
Graphics: NVIDIA GeForce GT 750M, NVIDIA GeForce GT 750M, PCIe
Memory Module: BANK 0/DIMM0, 8 GB, DDR3, 1600 MHz, 0x80AD, 0x484D54343147533641465238412D50422020
Memory Module: BANK 1/DIMM0, 8 GB, DDR3, 1600 MHz, 0x80AD, 0x484D54343147533641465238412D50422020
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x134), Broadcom BCM43xx 1.0 (7.77.61.1 AirPortDriverBrcmNIC-1305.2)
Bluetooth: Version 6.0.10f1, 3 services, 27 devices, 1 incoming serial ports
Network Service: Wi-Fi, AirPort, en0
Serial ATA Device: APPLE SSD SM0512F, 500.28 GB
USB Device: USB 3.0 Bus
USB Device: Apple Internal Keyboard / Trackpad
USB Device: BRCM20702 Hub
USB Device: Bluetooth USB Host Controller
Thunderbolt Bus: MacBook Pro, Apple Inc., 17.1

Cannot load library "paint.dll"

Open Vaa3D-x on Windows 11-64bit. The command window gives this message:

[D:\Tools_Win\Vaa3D-x.1.1.4\Vaa3D-x.exe]
MainWindow(0x2383668da70)
qt.core.qobject.connect: QObject::connect: No such signal QSignalMapper::mapped(QWidget*)
qt.core.qobject.connect: QObject::connect: No such slot QMdiArea::arrangeIcons()
"D:/Tools_Win/Vaa3D-x.1.1.4"
pluginsDirList--------- QList(QDir( "D:/Tools_Win/Vaa3D-x.1.1.4/plugins" , nameFilters = { "*" }, QDir::SortFlags( Name | IgnoreCase ) , QDir::Filters( Dirs|Files|Drives|AllEntries ) ))
Searching in ./plugins ......
Fail instantiation( Cannot load library D:\Tools_Win\Vaa3D-x.1.1.4\plugins\misc\paint\paint.dll: 找不到指定的模块。 ): "D:/Tools_Win/Vaa3D-x.1.1.4/plugins/misc/paint/paint.dll"
Searching ./plugins done.
"D:/Tools_Win/Vaa3D-x.1.1.4"
Starting Vaa3D version checker...

Could you provide an interface to load v3dpbd in python?

Vaa3d can't be installed on OSX 10.13.4

Vaa3D can't open stack

I downloaded the latest 3.2 for windows. I try to open a stack of .jpg files. Vaa3D can't find loci_tools.jar. So, I download from OME. Vaa3D doesn't like that version for some reason.

It looks like there should be additional instructions on what files are required for setup and how Vaa3D should be configured.

Can't run the application

Hello. I downloaded version v3.544 to my computer, followed the instructions but when I tried to run the application the following error message appeared:

This also happened with an older version and in a different computer.
What can I do to be able to run the application?
Thanks!

Cannot Import general files stack

The program pop out Information says that I didnt choose a file whose name is like xxx_000001.yyy, but actually my filename is exactly that format(Ana_000001.tif, Ana_000002.tif, they're in the same folder.) No matter which file I choose(series num 001 or other No.), it always pop out so I cannot import the files. I try it on Windows 10 and Windows 7 they all have this question.
How can I solve it?

plugins crash Ubuntu 16.04

I downloaded the latest release (v3.200) for Ubuntu, then I extracted the folder and started Vaa3D, I am able to load images and stack of images but when I try to apply a plugin Vaa3D closes without warning.

Cannot find plugins

Hi, I have installed Vaa3D version 3.458 for MacOSX (my version is 10.14.6), but it does not find any plugins, though they are all there in the plugins folder. Any hints on how to fix this?

celegans_straighten in celegans plugin not working

I have tried celegans_straighten in Vaa3d with default parameters on a 3D multiple channel stack, but failed. After straighten, only one plane image with one channel showed at "new_image_processed" window.
How can I solve it?

Image visualization issue in Vaa3D-x Release 1.1.4

Hi!
When loading a set of tiff files corresponding to different Z-slices from the same stack, I get an unusual visual representation in version 1.1.4 on a MacOS Monterey 12.7.2.
I get a normal visual representation in version 1.1.2.
See screenshots attached.
Not sure why that is the case.
Thank you.

Stuck at "Starting Vaa3D version checker..."

The tool was working properly till today. When I am trying to open, it always stuck at checking new versions.

Installation on Linux (Ubuntu 20)

Hello,

I've tried following the steps for recent and earlier versions of the software.
Getting the error:./vaa3d: error while loading shared libraries: libpng12.so.0: cannot open shared object file: No such file or directory
Any help would be appreciated.

Cannot Open Program

Hello I am trying to convert an swc file into stl, however I cannot open Vaa3D. I have a MacOS version 10.12, and downloaded the most recent Binary version.

Thanks!

Can't run v3.601 after unzipped the package

My system is Windows 64bit

Can anyone help me with this please

Cannot open newly installed software

I get the following error message when I attempt to open Vaa3D for the first time.

I think something is missing in the installation file. I invite your suggestions. Thank you.

Mary

Vaa3D-x Release 1.1.2: Ubuntu released zip file is damaged

Vaa3D-x Release 1.1.2: Ubuntu released zip file is damaged