In continuation of the -mllvm flag, the release did not fix the problem, since for some reason only LDFLAGS was deduplicated, I did a little debugging of the function that adds these arguments without duplicates, the results look like this
FlagAddNodupArgPar: LDFLAGS
FlagAddNodupArgPar: LDFLAGS
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version
FlagAddNodupArgPar: -march=native
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native
FlagAddNodupArgPar: -mtune=native
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native
FlagAddNodupArgPar: -O3
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3
FlagAddNodupArgPar: -pipe
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe
FlagAddNodupArgPar: -fstack-protector-strong
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong
FlagAddNodupArgPar: -flto=thin
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong
FlagAddNodupArgPar: -ffat-lto-objects
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects
FlagAddNodupArgPar: -fopenmp
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp
FlagAddNodupArgPar: -fplugin=LLVMPolly.so
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so
FlagAddNodupArgPar: -Xclang=-mllvm
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm
FlagAddNodupArgPar: -Xclang=-polly
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly
FlagAddNodupArgPar: -Xclang=-mllvm
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly
FlagAddNodupArgPar: -Xclang=-polly-parallel
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel
FlagAddNodupArgPar: -Xclang=-mllvm
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel
FlagAddNodupArgPar: -Xclang=-polly-vectorizer=stripmine
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine
FlagAddNodupArgPar: -Xclang=-mllvm
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine
FlagAddNodupArgPar: -Xclang=-polly-enable-mse
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse
FlagAddNodupArgPar: -Xclang=-mllvm
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse
FlagAddNodupArgPar: -Xclang=-polly-run-dce
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce
FlagAddNodupArgPar: -pthread
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread
FlagAddNodupArgPar: -fPIC
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC
FlagAddNodupArgPar: -g
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -march=native
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -mtune=native
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -O3
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -pipe
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -fstack-protector-strong
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -flto=thin
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -ffat-lto-objects
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -fopenmp
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -fplugin=LLVMPolly.so
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -Xclang=-mllvm
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -Xclang=-polly
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -Xclang=-mllvm
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -Xclang=-polly-parallel
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -Xclang=-mllvm
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -Xclang=-polly-vectorizer=stripmine
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -Xclang=-mllvm
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -Xclang=-polly-enable-mse
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -Xclang=-mllvm
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -Xclang=-polly-run-dce
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -pthread
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -fPIC
FlagAddNodupArgPar: -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -flto=thin -Wl,-O3,--sort-common,--as-needed,--undefined-version -march=native -mtune=native -O3 -pipe -fstack-protector-strong -ffat-lto-objects -fopenmp -fplugin=LLVMPolly.so -Xclang=-mllvm -Xclang=-polly -Xclang=-polly-parallel -Xclang=-polly-vectorizer=stripmine -Xclang=-polly-enable-mse -Xclang=-polly-run-dce -pthread -fPIC -g
FlagAddNodupArgPar: -g
FlagAddNodupArgPar: CFLAGS
FlagAddNodupArgPar: CXXFLAGS
FlagAddNodupArgPar: CPPFLAGS