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followers: 7.0 following: 72.0 repos: 180.0 gists: 0.0

Name: Manoj Kumar Valluru

Type: User

Company: University of Sheffield

Bio: Postdoctoral Researcher @ Uni of sheffield

Twitter: mkvalluru

Location: Sheffield, UK

Manoj Kumar Valluru's Projects

admire

ADmiRE: Annotative Database of miRNA Elements

afterqc

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

apa-scan

Detection and visualization of annotated and potential Alternative Polyadenylation events

apaeval

Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differential usage across RNA-seq samples

asap

Program for the analysis and visualization of whole-slide images in digital pathology

awesome-biological-image-analysis

A curated list of softwares, tools, pipelines, plugins etc. for image analysis related to biological questions.

awesome-cancer-variant-databases

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

awesome-crispr

List of software/websites/databases/other stuff for genome engineering

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

awesome-shell

A curated list of awesome command-line frameworks, toolkits, guides and gizmos. Inspired by awesome-php.

bad_days

Bioinformatics Awareness Days

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bcbio.variation

Toolkit to analyze genomic variation data, built on the GATK with Clojure

bhtsne

Barnes-Hut t-SNE

bioconda-recipes

Conda recipes for the bioconda channel.

biojupies

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

boxplotr.shiny

shiny application to generate box plots with R

brindleplots.jl

Visualization package for Whippet.jl

camicroscope

Digital pathology image viewer with support for human/machine generated annotations and markups.

cellxgene_vip

Enable cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format.

cgcloud

Image and VM management for Jenkins, Spark and Mesos clusters in EC2

chanjo

Chanjo provides a better way to analyze coverage data in clinical sequencing.

circdeep

End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning

circexplorer

A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)

circexplorer2

circular RNA analysis toolset

circfinder

A pipeline to map junction reads for circular intronic RNAs (ciRNAs)

circlncrnanet

An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs

circrna_finder

Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).

circrnafinder

a tool for identifying circular RNAs using RNA-Seq data

circtools

circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.

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Manoj Kumar Valluru's Projects

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