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plotly.js

The open source JavaScript graphing library that powers plotly

portcullis

Splice junction analysis and filtering from BAM files

prettymaps

A small set of Python functions to draw pretty maps from OpenStreetMap data. Based on osmnx, matplotlib and shapely libraries.

proteinnet

Standardized data set for machine learning of protein structure

psi-sigma

PSI-Sigma

pydock_tutorial

PyDock Tutorial

pytorch_fnet

Three dimensional cross-modal image inference

quip_distro

qupath

QuPath - Open Source Digital Pathology

raincloudplots

Code and tutorials to visualise your data that is both beautiful *and* statistically valid

rajlabimagetools

raw

The missing link between spreadsheets and data visualization

rbpsponge

reproduciblepython

Workshop materials for PyCon 2018 workshop on reproducible analysis in Python

rmats2sashimiplot

rna-seq-pipeline

WDL_RNA-Seq_star_rsem

rna-tools

🔧rna-tools (prev. rna-pdb-tools): a toolbox to analyze sequences, structures and simulations of RNA - docs @ http://rna-tools.rtfd.io

rnafusion

RNA-seq analysis pipeline for detection gene-fusions

rnaseq

Code for RNA-seq analysis and visualization.

rnaseq-1

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control

rnaseq-r

RNAseq analysis in R workshop

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

rnaseqdb

rpackages

R package development - the Leek group way!

run-wgcna

Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)

sailfish-cir

a pipeline for quantification of circular RNA.

sarek

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

serum_mirna_genes

shef_codefirst_python

Course materials for the Advanced Python course in Sheffield 🤖💪🏼👩🏻‍💻

sheffield_hpc

A repository for the Sheffield HPC documentation