Comments (2)
I have pushed a fix for this issue to the branch 'bugfix'. Can you check if it solves this problem? Thanks for reporting.
from crisp.
That was fast. Yes, the bugfix fixed the issue. In my data, I did not have any variant near the end of a contig. But all variants close to the beginning of a contig now get a FLANKSEQ=.
.
Let me say, by the way, that compiling crisp in Ubuntu was not straight forward. I had to add the -no-pie
flag to both Makefile and samtools/Makefile. May not be worth to open an issue for that. Best,
from crisp.
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from crisp.