vjcitn/ahtestazure

testing and benchmarking AnnotationHub on Azure

ahtestazure's Issues

boston hospital network

bwh.csv

Hamilton, MA

hamilton.csv

"","location","target","sec"
"1","Hamilton","azure/5050",20.168059118
"2","Hamilton","azure/5050",0.810155183
"3","Hamilton","fetch/5050",1.809651861
"4","Hamilton","fetch/5050",0.911198276
"5","Hamilton","azure/2",274.960759092
"6","Hamilton","azure/2",277.757770799
"7","Hamilton","fetch/2",291.018067077
"8","Hamilton","fetch/2",363.433501292

boston at home

bhome.csv

Brussels, EU

It looked like the 4 test got stuck at some point, so I cancelled it and re-run the test:

> library(AHtestAzure)

Loading required package: tools
> report_comparison("Brussels", "AHtestAzureTimings_20210914.csv")
/home/lgatto/.cache/R/BiocFileCache
  does not exist, create directory? (yes/no): yes
  |======================================================================| 100%

  |======================================================================| 100%

  |======================================================================| 100%

  |======================================================================| 100%

  |=========================================================             |  81%

  C-c C-c
Error in .util_download(x, rid[i], proxy, config, "bfcadd()", ...) : 
  bfcadd() failed; see warnings()
In addition: Warning messages:
1: download failed
  web resource path: ‘https://annotationhub.bioconductor.org/azure/2’
  local file path: ‘/home/lgatto/.cache/R/BiocFileCache/5ad661ab80347_2’
  reason: Operation was aborted by an application callback 
2: bfcadd() failed; resource removed
  rid: BFC5
  fpath: ‘https://annotationhub.bioconductor.org/azure/2’
  reason: download failed 
> 
> report_comparison("Brussels", "AHtestAzureTimings_20210914.csv")
  |======================================================================| 100%

  |======================================================================| 100%

  |======================================================================| 100%

  |======================================================================| 100%

  |======================================================================| 100%

  |======================================================================| 100%

  |======================================================================| 100%

  |======================================================================| 100%

>

Data : AHtestAzureTimings_20210914.csv

location	target	sec
Brussels	azure/5050	4.000504
Brussels	azure/5050	3.107061
Brussels	fetch/5050	1.936080
Brussels	fetch/5050	1.852271
Brussels	azure/2	1199.672422
Brussels	azure/2	1184.995062
Brussels	fetch/2	345.324902
Brussels	fetch/2	138.506939

GCP/AnVIL

gcp.csv

Japan East

> library(AHtestAzure)
Loading required package: tools
> report_comparison(location="Japan East")
/home/azureuser/.cache/R/BiocFileCache
  does not exist, create directory? (yes/no): yes
  |======================================================================| 100%

  |======================================================================| 100%

  |======================================================================| 100%

  |======================================================================| 100%

  |===============================================================       |  89%Error in .util_download(x, rid[i], proxy, config, "bfcadd()", ...) :
  bfcadd() failed; see warnings()
In addition: Warning messages:
1: download failed
  web resource path: ‘https://annotationhub.bioconductor.org/azure/2’
  local file path: ‘/home/azureuser/.cache/R/BiocFileCache/17b4e20148fe4_2’
  reason: OpenSSL SSL_read: Connection reset by peer, errno 104
2: bfcadd() failed; resource removed
  rid: BFC5
  fpath: ‘https://annotationhub.bioconductor.org/azure/2’
  reason: download failed
>

Padova, Italy

padova.csv

Melbourne, Australia

Run from home network
It hung on the 3rd or 4th test the first time I tried it last night so I just re-ran this morning (without cleaning the cache)
AHtestAzure.csv

Brooklyn, NY

brooklyn.csv