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This project forked from lifebit-ai/phewas

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Performs a PheWAS analysis & generates a Manhattan plot using the PheWAS R package

Dockerfile 2.83% R 38.91% Nextflow 53.41% Python 4.86%

phewas's Introduction

phewas

Example command to run the pipeline:

nextflow run main.nf --vcf_file testdata/vcf_samples.csv --pheno SMOKER --pheno_file testdata/all.doid.count.csv

phewas's People

Contributors

philpalmer avatar

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